Semi-finals
Atlantas 1 -
2 Suduva
Ekranas 3 -
2 FC Vilnius
Quarter-finals
Kaunas 0 -
3 Atlantas
FC Vilnius 1 -
1 Žalgiris
Ekranas 2 -
1 Vetra
Nevezis 3 -
8 Suduva
8th Finals
Vetra II 0 -
2 FC Vilnius
FC Jonava 0 -
9 Vetra
Šiauliai 1 -
6 Kaunas
Nevezis 4 -
3 Silute
Zalgiris II 2 -
6 Atlantas
Kruoja 0 -
9 Ekranas
Kaunas-2 0 -
4 Žalgiris
Alytus 1 -
4 Suduva
Lithuanian Cup
| Winner | |
| Country |  Lithuania |
| Date | 14.03.2006 - 21.10.2006 |
| Played | 29 of 29 |
