Semi-finals
TVMK 5 -
4 Narva
Flora 4 -
5 Levadia
Quarter-finals
Levadia II 1 -
7 Flora
Kuressaare 2 -
13 TVMK
FC Valga 1 -
6 Narva
Lootus Kohtla-Jarve 0 -
6 Levadia
8th Finals
Estonian Cup
| Winner | |
| Country |  Estonia |
| Date | 09.09.2003 - 20.05.2004 |
| Played | 25 of 25 |
